AiravataJPARegistry (Airavata JPA Registry 0.8 API)

java.lang.Object
- java.util.Observable
- - org.apache.airavata.registry.api.AiravataRegistry2
  - - org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry

All Implemented Interfaces:

AiravataSubRegistry, ConfigurationRegistry, DescriptorRegistry, ProjectsRegistry, ProvenanceRegistry, PublishedWorkflowRegistry, UserWorkflowRegistry
```
public class AiravataJPARegistry
extends AiravataRegistry2
```

Field Summary
- Fields inherited from class org.apache.airavata.registry.api.AiravataRegistry2
  SERVICE_TTL

Constructor Summary

Constructors
Constructor and Description

AiravataJPARegistry()

Constructors
Constructor and Description
`AiravataJPARegistry()`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`addApplicationDescriptor(ServiceDescription serviceDescription, HostDescription hostDescriptor, ApplicationDescription descriptor)`
`void`	`addApplicationDescriptor(String serviceName, String hostName, ApplicationDescription descriptor)`
`void`	`addApplicationJob(ApplicationJob job)`
`int`	`addApplicationJobExecutionError(ApplicationJobExecutionError error)`
`void`	`addConfiguration(String key, String value, Date expire)`
`void`	`addExperiment(String projectName, AiravataExperiment experiment)`
`int`	`addExperimentError(ExperimentExecutionError error)`
`void`	`addGFacURI(URI uri)`
`void`	`addGFacURI(URI uri, Date expire)`
`void`	`addHostDescriptor(HostDescription descriptor)`
`int`	`addNodeExecutionError(NodeExecutionError error)`
`void`	`addServiceDescriptor(ServiceDescription descriptor)`
`void`	`addWorkflow(String workflowName, String workflowGraphXml)`
`int`	`addWorkflowExecutionError(WorkflowExecutionError error)`
`void`	`addWorkflowInstance(String experimentId, String workflowInstanceId, String templateName)`
`void`	`addWorkflowInstanceNode(String workflowInstanceId, String nodeId)`
`void`	`addWorkflowInterpreterURI(URI uri)`
`void`	`addWorkflowInterpreterURI(URI uri, Date expire)`
`void`	`addWorkspaceProject(WorkspaceProject project)`
`void`	`deleteWorkspaceProject(String projectName)`
`AiravataUser`	`getAiravataUser()`
`List<ExperimentData>`	`getAllExperimentMetaInformation(String user)`
`ApplicationDescription`	`getApplicationDescriptor(String serviceName, String hostname, String applicationName)`
`ResourceMetadata`	`getApplicationDescriptorMetadata(String serviceName, String hostName, String applicationName)`
`Map<String[],ApplicationDescription>`	`getApplicationDescriptors()`
`Map<String,ApplicationDescription>`	`getApplicationDescriptors(String serviceName)`
`ApplicationDescription`	`getApplicationDescriptors(String serviceName, String hostname)`
`ApplicationJob`	`getApplicationJob(String gfacJobId)`
`List<ApplicationJobExecutionError>`	`getApplicationJobErrors(String gfacJobId)`
`List<ApplicationJobExecutionError>`	`getApplicationJobErrors(String experimentId, String workflowInstanceId, String nodeId, String gfacJobId)`
`List<ApplicationJob>`	`getApplicationJobs(String experimentId, String workflowExecutionId, String nodeId)`
`List<ApplicationJob>`	`getApplicationJobsForDescriptors(String serviceDescriptionId, String hostDescriptionId, String applicationDescriptionId)`
`List<ApplicationJobStatusData>`	`getApplicationJobStatusHistory(String jobId)`
`PasswordCallback`	`getCallback()`
`Object`	`getConfiguration(String key)` ---------------------------------Configuration Registry----------------------------------
`List<Object>`	`getConfigurationList(String key)`
`URI`	`getConnectionURI()`
`URI`	`getEventingServiceURI()`
`List<ExecutionError>`	`getExecutionErrors(String experimentId, String workflowInstanceId, String nodeId, String gfacJobId, ExecutionErrors.Source... filterBy)`
`ExperimentData`	`getExperiment(String experimentId)`
`List<ExperimentData>`	`getExperimentByUser(String user)`
`List<ExperimentData>`	`getExperimentByUser(String user, int pageSize, int pageNo)`
`List<ExperimentExecutionError>`	`getExperimentExecutionErrors(String experimentId)`
`String`	`getExperimentExecutionUser(String experimentId)`
`List<String>`	`getExperimentIdByUser(String user)`
`String`	`getExperimentMetadata(String experimentId)`
`ExperimentData`	`getExperimentMetaInformation(String experimentId)`
`String`	`getExperimentName(String experimentId)`
`List<AiravataExperiment>`	`getExperiments()`
`List<AiravataExperiment>`	`getExperiments(Date from, Date to)`
`List<AiravataExperiment>`	`getExperiments(String projectName)`
`List<AiravataExperiment>`	`getExperiments(String projectName, Date from, Date to)`
`List<WorkflowExecution>`	`getExperimentWorkflowInstances(String experimentId)`
`List<URI>`	`getGFacURIs()`
`HostDescription`	`getHostDescriptor(String hostName)`
`ResourceMetadata`	`getHostDescriptorMetadata(String hostName)`
`List<HostDescription>`	`getHostDescriptors()`
`URI`	`getMessageBoxURI()`
`List<NodeExecutionError>`	`getNodeExecutionErrors(String experimentId, String workflowInstanceId, String nodeId)`
`String`	`getPublishedWorkflowGraphXML(String workflowName)`
`ResourceMetadata`	`getPublishedWorkflowMetadata(String workflowName)`
`List<String>`	`getPublishedWorkflowNames()`
`Map<String,String>`	`getPublishedWorkflows()`
`ServiceDescription`	`getServiceDescriptor(String serviceName)`
`ResourceMetadata`	`getServiceDescriptorMetadata(String serviceName)`
`List<ServiceDescription>`	`getServiceDescriptors()`
`org.apache.airavata.common.utils.Version`	`getVersion()`
`List<WorkflowExecutionError>`	`getWorkflowExecutionErrors(String experimentId, String workflowInstanceId)`
`List<WorkflowIOData>`	`getWorkflowExecutionOutput(String experimentId)` Deprecated.
`WorkflowIOData`	`getWorkflowExecutionOutput(String experimentId, String outputNodeName)` Deprecated.
`String[]`	`getWorkflowExecutionOutputNames(String exeperimentId)` Deprecated.
`String`	`getWorkflowExecutionTemplateName(String workflowInstanceId)`
`String`	`getWorkflowGraphXML(String workflowName)`
`WorkflowExecutionData`	`getWorkflowInstanceData(String workflowInstanceId)`
`NodeExecutionData`	`getWorkflowInstanceNodeData(String workflowInstanceId, String nodeId)`
`List<WorkflowNodeIOData>`	`getWorkflowInstanceNodeInput(String workflowInstanceId, String nodeType)`
`List<WorkflowNodeIOData>`	`getWorkflowInstanceNodeOutput(String workflowInstanceId, String nodeType)`
`WorkflowExecutionStatus`	`getWorkflowInstanceStatus(String instanceId)`
`List<URI>`	`getWorkflowInterpreterURIs()`
`ResourceMetadata`	`getWorkflowMetadata(String workflowName)`
`Date`	`getWorkflowNodeStartTime(WorkflowInstanceNode workflowNode)`
`NodeExecutionStatus`	`getWorkflowNodeStatus(WorkflowInstanceNode workflowNode)`
`Map<String,String>`	`getWorkflows()`
`Date`	`getWorkflowStartTime(WorkflowExecution workflowInstance)`
`WorkspaceProject`	`getWorkspaceProject(String projectName)`
`List<WorkspaceProject>`	`getWorkspaceProjects()`
`protected void`	`initialize()`
`boolean`	`isActive()`
`boolean`	`isApplicationDescriptorExists(String serviceName, String hostName, String descriptorName)`
`boolean`	`isApplicationJobExists(String gfacJobId)`
`boolean`	`isExperimentExists(String experimentId)`
`boolean`	`isExperimentExists(String experimentId, boolean createIfNotPresent)` ---------------------------------Provenance Registry----------------------------------
`boolean`	`isExperimentNameExist(String experimentName)`
`boolean`	`isHostDescriptorExists(String descriptorName)` ---------------------------------Descriptor Registry----------------------------------
`boolean`	`isPublishedWorkflowExists(String workflowName)` ---------------------------------Published Workflow Registry----------------------------------
`boolean`	`isServiceDescriptorExists(String descriptorName)`
`boolean`	`isWorkflowExists(String workflowName)` ---------------------------------User Workflow Registry----------------------------------
`boolean`	`isWorkflowInstanceExists(String instanceId)`
`boolean`	`isWorkflowInstanceExists(String instanceId, boolean createIfNotPresent)`
`boolean`	`isWorkflowInstanceNodePresent(String workflowInstanceId, String nodeId)`
`boolean`	`isWorkflowInstanceNodePresent(String workflowInstanceId, String nodeId, boolean createIfNotPresent)`
`boolean`	`isWorkspaceProjectExists(String projectName)`
`boolean`	`isWorkspaceProjectExists(String projectName, boolean createIfNotExists)`
`void`	`publishWorkflow(String workflowName)`
`void`	`publishWorkflow(String workflowName, String publishWorkflowName)`
`void`	`removeAllConfiguration(String key)`
`void`	`removeAllGFacURI()`
`void`	`removeAllWorkflowInterpreterURI()`
`void`	`removeApplicationDescriptor(String serviceName, String hostName, String applicationName)`
`void`	`removeConfiguration(String key, String value)`
`void`	`removeExperiment(String experimentId)`
`void`	`removeGFacURI(URI uri)`
`void`	`removeHostDescriptor(String hostName)`
`void`	`removePublishedWorkflow(String workflowName)`
`void`	`removeServiceDescriptor(String serviceName)`
`void`	`removeWorkflow(String workflowName)`
`void`	`removeWorkflowInterpreterURI(URI uri)`
`void`	`saveWorkflowExecutionOutput(String experimentId, String outputNodeName, String output)` Deprecated.
`void`	`saveWorkflowExecutionOutput(String experimentId, WorkflowIOData data)` Deprecated.
`List<ExperimentData>`	`searchExperiments(String user, String experimentNameRegex)`
`List<WorkflowNodeIOData>`	`searchWorkflowInstanceNodeInput(String experimentIdRegEx, String workflowNameRegEx, String nodeNameRegEx)`
`List<WorkflowNodeIOData>`	`searchWorkflowInstanceNodeOutput(String experimentIdRegEx, String workflowNameRegEx, String nodeNameRegEx)`
`void`	`setAiravataRegistry(AiravataRegistry2 registry)`
`void`	`setAiravataUser(AiravataUser user)`
`void`	`setCallback(PasswordCallback callback)`
`void`	`setConfiguration(String key, String value, Date expire)`
`void`	`setConnectionURI(URI connectionURI)`
`void`	`setEventingURI(URI uri)`
`void`	`setEventingURI(URI uri, Date expire)`
`void`	`setMessageBoxURI(URI uri)`
`void`	`setMessageBoxURI(URI uri, Date expire)`
`void`	`setWorkflowInstanceTemplateName(String workflowInstanceId, String templateName)`
`void`	`udpateApplicationDescriptor(ServiceDescription serviceDescription, HostDescription hostDescriptor, ApplicationDescription descriptor)`
`void`	`unsetEventingURI()`
`void`	`unsetMessageBoxURI()`
`void`	`updateApplicationDescriptor(String serviceName, String hostName, ApplicationDescription descriptor)`
`void`	`updateApplicationJob(ApplicationJob job)`
`void`	`updateApplicationJobData(String gfacJobId, String jobdata)`
`void`	`updateApplicationJobMetadata(String gfacJobId, String metadata)`
`void`	`updateApplicationJobStatus(String gfacJobId, ApplicationJob.ApplicationJobStatus status, Date statusUpdateTime)`
`void`	`updateApplicationJobStatusUpdateTime(String gfacJobId, Date completed)`
`void`	`updateApplicationJobSubmittedTime(String gfacJobId, Date submitted)`
`void`	`updateExperimentExecutionUser(String experimentId, String user)`
`void`	`updateExperimentMetadata(String experimentId, String metadata)`
`void`	`updateExperimentName(String experimentId, String experimentName)`
`void`	`updateHostDescriptor(HostDescription descriptor)`
`void`	`updateServiceDescriptor(ServiceDescription descriptor)`
`void`	`updateWorkflow(String workflowName, String workflowGraphXml)`
`void`	`updateWorkflowInstanceStatus(String instanceId, WorkflowExecutionStatus.State status)`
`void`	`updateWorkflowInstanceStatus(WorkflowExecutionStatus status)`
`void`	`updateWorkflowNodeGramData(WorkflowNodeGramData workflowNodeGramData)`
`void`	`updateWorkflowNodeInput(WorkflowInstanceNode node, String data)`
`void`	`updateWorkflowNodeOutput(WorkflowInstanceNode node, String data)`
`void`	`updateWorkflowNodeStatus(NodeExecutionStatus workflowStatusNode)`
`void`	`updateWorkflowNodeStatus(String workflowInstanceId, String nodeId, WorkflowExecutionStatus.State status)`
`void`	`updateWorkflowNodeStatus(WorkflowInstanceNode workflowNode, WorkflowExecutionStatus.State status)`
`void`	`updateWorkflowNodeType(WorkflowInstanceNode node, WorkflowNodeType type)`
`void`	`updateWorkspaceProject(WorkspaceProject project)`

Methods inherited from class org.apache.airavata.registry.api.AiravataRegistry2
getGateway, getUser, preInitialize, setGateway, setUser

Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- AiravataJPARegistry
```
public AiravataJPARegistry()
```

Method Detail

initialize
```
protected void initialize()
                   throws RegistryException
```
Specified by:

initialize in class AiravataRegistry2

Throws:

RegistryException

isActive
```
public boolean isActive()
```

getConfiguration
```
public Object getConfiguration(String key)
```
---------------------------------Configuration Registry----------------------------------

getConfigurationList

public List<Object> getConfigurationList(String key)

setConfiguration

public void setConfiguration(String key,
                    String value,
                    Date expire)

addConfiguration

public void addConfiguration(String key,
                    String value,
                    Date expire)

removeAllConfiguration

public void removeAllConfiguration(String key)

removeConfiguration

public void removeConfiguration(String key,
                       String value)

getGFacURIs
```
public List<URI> getGFacURIs()
```

getWorkflowInterpreterURIs

public List<URI> getWorkflowInterpreterURIs()

getEventingServiceURI
```
public URI getEventingServiceURI()
```

getMessageBoxURI
```
public URI getMessageBoxURI()
```

addGFacURI
```
public void addGFacURI(URI uri)
```

addWorkflowInterpreterURI

public void addWorkflowInterpreterURI(URI uri)

setEventingURI
```
public void setEventingURI(URI uri)
```

setMessageBoxURI

public void setMessageBoxURI(URI uri)

addGFacURI

public void addGFacURI(URI uri,
              Date expire)

addWorkflowInterpreterURI

public void addWorkflowInterpreterURI(URI uri,
                             Date expire)

setEventingURI

public void setEventingURI(URI uri,
                  Date expire)

setMessageBoxURI

public void setMessageBoxURI(URI uri,
                    Date expire)

removeGFacURI
```
public void removeGFacURI(URI uri)
```

removeWorkflowInterpreterURI

public void removeWorkflowInterpreterURI(URI uri)

removeAllGFacURI
```
public void removeAllGFacURI()
```

removeAllWorkflowInterpreterURI

public void removeAllWorkflowInterpreterURI()

unsetEventingURI
```
public void unsetEventingURI()
```

unsetMessageBoxURI
```
public void unsetMessageBoxURI()
```

isHostDescriptorExists
```
public boolean isHostDescriptorExists(String descriptorName)
                               throws RegistryException
```
---------------------------------Descriptor Registry----------------------------------

Throws:

RegistryException

addHostDescriptor

public void addHostDescriptor(HostDescription descriptor)
                       throws RegistryException

Throws:: RegistryException

updateHostDescriptor

public void updateHostDescriptor(HostDescription descriptor)
                          throws RegistryException

Throws:: RegistryException

getHostDescriptor

public HostDescription getHostDescriptor(String hostName)
                                  throws RegistryException

Throws:: RegistryException

removeHostDescriptor

public void removeHostDescriptor(String hostName)
                          throws RegistryException

Throws:: RegistryException

getHostDescriptors

public List<HostDescription> getHostDescriptors()
                                         throws MalformedDescriptorException,
                                                RegistryException

Throws:: MalformedDescriptorException; RegistryException

getHostDescriptorMetadata

public ResourceMetadata getHostDescriptorMetadata(String hostName)
                                           throws RegistryException

Throws:: RegistryException

isServiceDescriptorExists

public boolean isServiceDescriptorExists(String descriptorName)
                                  throws RegistryException

Throws:: RegistryException

addServiceDescriptor

public void addServiceDescriptor(ServiceDescription descriptor)
                          throws RegistryException

Throws:: RegistryException

updateServiceDescriptor

public void updateServiceDescriptor(ServiceDescription descriptor)
                             throws RegistryException

Throws:: RegistryException

getServiceDescriptor

public ServiceDescription getServiceDescriptor(String serviceName)
                                        throws RegistryException,
                                               MalformedDescriptorException

Throws:: RegistryException; MalformedDescriptorException

removeServiceDescriptor

public void removeServiceDescriptor(String serviceName)
                             throws RegistryException

Throws:: RegistryException

getServiceDescriptors

public List<ServiceDescription> getServiceDescriptors()
                                               throws MalformedDescriptorException,
                                                      RegistryException

Throws:: MalformedDescriptorException; RegistryException

getServiceDescriptorMetadata

public ResourceMetadata getServiceDescriptorMetadata(String serviceName)
                                              throws RegistryException

Throws:: RegistryException

isApplicationDescriptorExists

public boolean isApplicationDescriptorExists(String serviceName,
                                    String hostName,
                                    String descriptorName)
                                      throws RegistryException

Throws:: RegistryException

addApplicationDescriptor

public void addApplicationDescriptor(ServiceDescription serviceDescription,
                            HostDescription hostDescriptor,
                            ApplicationDescription descriptor)
                              throws RegistryException

Throws:: RegistryException

addApplicationDescriptor

public void addApplicationDescriptor(String serviceName,
                            String hostName,
                            ApplicationDescription descriptor)
                              throws RegistryException

Throws:: RegistryException

udpateApplicationDescriptor

public void udpateApplicationDescriptor(ServiceDescription serviceDescription,
                               HostDescription hostDescriptor,
                               ApplicationDescription descriptor)
                                 throws RegistryException

Throws:: RegistryException

updateApplicationDescriptor

public void updateApplicationDescriptor(String serviceName,
                               String hostName,
                               ApplicationDescription descriptor)
                                 throws RegistryException

Throws:: RegistryException

getApplicationDescriptor

public ApplicationDescription getApplicationDescriptor(String serviceName,
                                              String hostname,
                                              String applicationName)
                                                throws DescriptorDoesNotExistsException,
                                                       MalformedDescriptorException,
                                                       RegistryException

Throws:: DescriptorDoesNotExistsException; MalformedDescriptorException; RegistryException

getApplicationDescriptors

public ApplicationDescription getApplicationDescriptors(String serviceName,
                                               String hostname)
                                                 throws RegistryException

Throws:: RegistryException

getApplicationDescriptors

public Map<String,ApplicationDescription> getApplicationDescriptors(String serviceName)
                                                             throws RegistryException

Throws:: RegistryException

getApplicationDescriptors

public Map<String[],ApplicationDescription> getApplicationDescriptors()
                                                               throws MalformedDescriptorException,
                                                                      RegistryException

Throws:: MalformedDescriptorException; RegistryException

removeApplicationDescriptor

public void removeApplicationDescriptor(String serviceName,
                               String hostName,
                               String applicationName)
                                 throws RegistryException

Throws:: RegistryException

getApplicationDescriptorMetadata

public ResourceMetadata getApplicationDescriptorMetadata(String serviceName,
                                                String hostName,
                                                String applicationName)
                                                  throws RegistryException

Throws:: RegistryException

isWorkspaceProjectExists

public boolean isWorkspaceProjectExists(String projectName)
                                 throws RegistryException

Throws:: RegistryException

isWorkspaceProjectExists

public boolean isWorkspaceProjectExists(String projectName,
                               boolean createIfNotExists)
                                 throws RegistryException

Throws:: RegistryException

addWorkspaceProject

public void addWorkspaceProject(WorkspaceProject project)
                         throws RegistryException

Throws:: RegistryException

updateWorkspaceProject

public void updateWorkspaceProject(WorkspaceProject project)
                            throws RegistryException

Throws:: RegistryException

deleteWorkspaceProject

public void deleteWorkspaceProject(String projectName)
                            throws RegistryException

Throws:: RegistryException

getWorkspaceProject

public WorkspaceProject getWorkspaceProject(String projectName)
                                     throws RegistryException

Throws:: RegistryException

getWorkspaceProjects

public List<WorkspaceProject> getWorkspaceProjects()
                                            throws RegistryException

Throws:: RegistryException

addExperiment

public void addExperiment(String projectName,
                 AiravataExperiment experiment)
                   throws RegistryException

Throws:: RegistryException

removeExperiment

public void removeExperiment(String experimentId)
                      throws ExperimentDoesNotExistsException

Throws:: ExperimentDoesNotExistsException

getExperiments

public List<AiravataExperiment> getExperiments()
                                        throws RegistryException

Throws:: RegistryException

getExperiments

public List<AiravataExperiment> getExperiments(String projectName)
                                        throws RegistryException

Throws:: RegistryException

getExperiments

public List<AiravataExperiment> getExperiments(Date from,
                                      Date to)
                                        throws RegistryException

Throws:: RegistryException

getExperiments

public List<AiravataExperiment> getExperiments(String projectName,
                                      Date from,
                                      Date to)
                                        throws RegistryException

Throws:: RegistryException

isPublishedWorkflowExists
```
public boolean isPublishedWorkflowExists(String workflowName)
                                  throws RegistryException
```
---------------------------------Published Workflow Registry----------------------------------

Throws:

RegistryException

publishWorkflow

public void publishWorkflow(String workflowName,
                   String publishWorkflowName)
                     throws RegistryException

Throws:: RegistryException

publishWorkflow

public void publishWorkflow(String workflowName)
                     throws RegistryException

Throws:: RegistryException

getPublishedWorkflowGraphXML

public String getPublishedWorkflowGraphXML(String workflowName)
                                    throws RegistryException

Throws:: RegistryException

getPublishedWorkflowNames

public List<String> getPublishedWorkflowNames()
                                       throws RegistryException

Throws:: RegistryException

getPublishedWorkflows

public Map<String,String> getPublishedWorkflows()
                                         throws RegistryException

Throws:: RegistryException

removePublishedWorkflow

public void removePublishedWorkflow(String workflowName)
                             throws RegistryException

Throws:: RegistryException

getPublishedWorkflowMetadata

public ResourceMetadata getPublishedWorkflowMetadata(String workflowName)
                                              throws RegistryException

Throws:: RegistryException

isWorkflowExists
```
public boolean isWorkflowExists(String workflowName)
                         throws RegistryException
```
---------------------------------User Workflow Registry----------------------------------

Throws:

RegistryException

addWorkflow

public void addWorkflow(String workflowName,
               String workflowGraphXml)
                 throws RegistryException

Throws:: RegistryException

updateWorkflow

public void updateWorkflow(String workflowName,
                  String workflowGraphXml)
                    throws RegistryException

Throws:: RegistryException

getWorkflowGraphXML

public String getWorkflowGraphXML(String workflowName)
                           throws RegistryException

Throws:: RegistryException

getWorkflows

public Map<String,String> getWorkflows()
                                throws RegistryException

Throws:: RegistryException

removeWorkflow

public void removeWorkflow(String workflowName)
                    throws RegistryException

Throws:: RegistryException

getWorkflowMetadata

public ResourceMetadata getWorkflowMetadata(String workflowName)
                                     throws RegistryException

Throws:: RegistryException

setAiravataRegistry

public void setAiravataRegistry(AiravataRegistry2 registry)

setAiravataUser

public void setAiravataUser(AiravataUser user)

getAiravataUser
```
public AiravataUser getAiravataUser()
```

isExperimentExists

public boolean isExperimentExists(String experimentId,
                         boolean createIfNotPresent)
                           throws RegistryException

---------------------------------Provenance Registry----------------------------------

Throws:: RegistryException

isExperimentExists

public boolean isExperimentExists(String experimentId)
                           throws RegistryException

Throws:: RegistryException

updateExperimentExecutionUser

public void updateExperimentExecutionUser(String experimentId,
                                 String user)
                                   throws RegistryException

Throws:: RegistryException

getExperimentExecutionUser

public String getExperimentExecutionUser(String experimentId)
                                  throws RegistryException

Throws:: RegistryException

isExperimentNameExist

public boolean isExperimentNameExist(String experimentName)
                              throws RegistryException

Throws:: RegistryException

getExperimentName

public String getExperimentName(String experimentId)
                         throws RegistryException

Throws:: RegistryException

updateExperimentName

public void updateExperimentName(String experimentId,
                        String experimentName)
                          throws RegistryException

Throws:: RegistryException

getExperimentMetadata

public String getExperimentMetadata(String experimentId)
                             throws RegistryException

Throws:: RegistryException

updateExperimentMetadata

public void updateExperimentMetadata(String experimentId,
                            String metadata)
                              throws RegistryException

Throws:: RegistryException

getWorkflowExecutionTemplateName

public String getWorkflowExecutionTemplateName(String workflowInstanceId)
                                        throws RegistryException

Throws:: RegistryException

setWorkflowInstanceTemplateName

public void setWorkflowInstanceTemplateName(String workflowInstanceId,
                                   String templateName)
                                     throws RegistryException

Throws:: RegistryException

getExperimentWorkflowInstances

public List<WorkflowExecution> getExperimentWorkflowInstances(String experimentId)
                                                       throws RegistryException

Throws:: RegistryException

isWorkflowInstanceExists

public boolean isWorkflowInstanceExists(String instanceId,
                               boolean createIfNotPresent)
                                 throws RegistryException

Throws:: RegistryException

isWorkflowInstanceExists

public boolean isWorkflowInstanceExists(String instanceId)
                                 throws RegistryException

Throws:: RegistryException

updateWorkflowInstanceStatus

public void updateWorkflowInstanceStatus(String instanceId,
                                WorkflowExecutionStatus.State status)
                                  throws RegistryException

Throws:: RegistryException

updateWorkflowInstanceStatus

public void updateWorkflowInstanceStatus(WorkflowExecutionStatus status)
                                  throws RegistryException

Throws:: RegistryException

getWorkflowInstanceStatus

public WorkflowExecutionStatus getWorkflowInstanceStatus(String instanceId)
                                                  throws RegistryException

Throws:: RegistryException

updateWorkflowNodeInput

public void updateWorkflowNodeInput(WorkflowInstanceNode node,
                           String data)
                             throws RegistryException

Throws:: RegistryException

updateWorkflowNodeOutput

public void updateWorkflowNodeOutput(WorkflowInstanceNode node,
                            String data)
                              throws RegistryException

Throws:: RegistryException

searchWorkflowInstanceNodeInput

public List<WorkflowNodeIOData> searchWorkflowInstanceNodeInput(String experimentIdRegEx,
                                                       String workflowNameRegEx,
                                                       String nodeNameRegEx)
                                                         throws RegistryException

Throws:: RegistryException

searchWorkflowInstanceNodeOutput

public List<WorkflowNodeIOData> searchWorkflowInstanceNodeOutput(String experimentIdRegEx,
                                                        String workflowNameRegEx,
                                                        String nodeNameRegEx)
                                                          throws RegistryException

Throws:: RegistryException

getWorkflowInstanceNodeInput

public List<WorkflowNodeIOData> getWorkflowInstanceNodeInput(String workflowInstanceId,
                                                    String nodeType)
                                                      throws RegistryException

Throws:: RegistryException

getWorkflowInstanceNodeOutput

public List<WorkflowNodeIOData> getWorkflowInstanceNodeOutput(String workflowInstanceId,
                                                     String nodeType)
                                                       throws RegistryException

Throws:: RegistryException

saveWorkflowExecutionOutput

@Deprecated
public void saveWorkflowExecutionOutput(String experimentId,
                                          String outputNodeName,
                                          String output)
                                 throws RegistryException

Deprecated.

Throws:: RegistryException

saveWorkflowExecutionOutput

@Deprecated
public void saveWorkflowExecutionOutput(String experimentId,
                                          WorkflowIOData data)
                                 throws RegistryException

Deprecated.

Throws:: RegistryException

getWorkflowExecutionOutput

@Deprecated
public WorkflowIOData getWorkflowExecutionOutput(String experimentId,
                                                   String outputNodeName)
                                          throws RegistryException

Deprecated.

Throws:: RegistryException

getWorkflowExecutionOutput

@Deprecated
public List<WorkflowIOData> getWorkflowExecutionOutput(String experimentId)
                                                throws RegistryException

Deprecated.

Throws:: RegistryException

getWorkflowExecutionOutputNames

@Deprecated
public String[] getWorkflowExecutionOutputNames(String exeperimentId)
                                         throws RegistryException

Deprecated.

Throws:: RegistryException

getExperiment

public ExperimentData getExperiment(String experimentId)
                             throws RegistryException

Throws:: RegistryException

getExperimentIdByUser

public List<String> getExperimentIdByUser(String user)
                                   throws RegistryException

Throws:: RegistryException

getExperimentByUser

public List<ExperimentData> getExperimentByUser(String user)
                                         throws RegistryException

Throws:: RegistryException

getExperimentByUser

public List<ExperimentData> getExperimentByUser(String user,
                                       int pageSize,
                                       int pageNo)
                                         throws RegistryException

Throws:: RegistryException

updateWorkflowNodeStatus

public void updateWorkflowNodeStatus(NodeExecutionStatus workflowStatusNode)
                              throws RegistryException

Throws:: RegistryException

updateWorkflowNodeStatus

public void updateWorkflowNodeStatus(String workflowInstanceId,
                            String nodeId,
                            WorkflowExecutionStatus.State status)
                              throws RegistryException

Throws:: RegistryException

updateWorkflowNodeStatus

public void updateWorkflowNodeStatus(WorkflowInstanceNode workflowNode,
                            WorkflowExecutionStatus.State status)
                              throws RegistryException

Throws:: RegistryException

getWorkflowNodeStatus

public NodeExecutionStatus getWorkflowNodeStatus(WorkflowInstanceNode workflowNode)
                                          throws RegistryException

Throws:: RegistryException

getWorkflowNodeStartTime

public Date getWorkflowNodeStartTime(WorkflowInstanceNode workflowNode)
                              throws RegistryException

Throws:: RegistryException

getWorkflowStartTime

public Date getWorkflowStartTime(WorkflowExecution workflowInstance)
                          throws RegistryException

Throws:: RegistryException

updateWorkflowNodeGramData

public void updateWorkflowNodeGramData(WorkflowNodeGramData workflowNodeGramData)
                                throws RegistryException

Throws:: RegistryException

getWorkflowInstanceData

public WorkflowExecutionData getWorkflowInstanceData(String workflowInstanceId)
                                              throws RegistryException

Throws:: RegistryException

getWorkflowInstanceNodeData

public NodeExecutionData getWorkflowInstanceNodeData(String workflowInstanceId,
                                            String nodeId)
                                              throws RegistryException

Throws:: RegistryException

isWorkflowInstanceNodePresent

public boolean isWorkflowInstanceNodePresent(String workflowInstanceId,
                                    String nodeId)
                                      throws RegistryException

Throws:: RegistryException

isWorkflowInstanceNodePresent

public boolean isWorkflowInstanceNodePresent(String workflowInstanceId,
                                    String nodeId,
                                    boolean createIfNotPresent)
                                      throws RegistryException

Throws:: RegistryException

addWorkflowInstance

public void addWorkflowInstance(String experimentId,
                       String workflowInstanceId,
                       String templateName)
                         throws RegistryException

Throws:: RegistryException

updateWorkflowNodeType

public void updateWorkflowNodeType(WorkflowInstanceNode node,
                          WorkflowNodeType type)
                            throws RegistryException

Throws:: RegistryException

addWorkflowInstanceNode

public void addWorkflowInstanceNode(String workflowInstanceId,
                           String nodeId)
                             throws RegistryException

Throws:: RegistryException

getExperimentMetaInformation

public ExperimentData getExperimentMetaInformation(String experimentId)
                                            throws RegistryException

Throws:: RegistryException

getAllExperimentMetaInformation

public List<ExperimentData> getAllExperimentMetaInformation(String user)
                                                     throws RegistryException

Throws:: RegistryException

searchExperiments

public List<ExperimentData> searchExperiments(String user,
                                     String experimentNameRegex)
                                       throws RegistryException

Throws:: RegistryException

getVersion

public org.apache.airavata.common.utils.Version getVersion()

setConnectionURI

public void setConnectionURI(URI connectionURI)

getConnectionURI
```
public URI getConnectionURI()
```

setCallback

public void setCallback(PasswordCallback callback)

getCallback
```
public PasswordCallback getCallback()
```

getExperimentExecutionErrors

public List<ExperimentExecutionError> getExperimentExecutionErrors(String experimentId)
                                                            throws RegistryException

Throws:: RegistryException

getWorkflowExecutionErrors

public List<WorkflowExecutionError> getWorkflowExecutionErrors(String experimentId,
                                                      String workflowInstanceId)
                                                        throws RegistryException

Throws:: RegistryException

getNodeExecutionErrors

public List<NodeExecutionError> getNodeExecutionErrors(String experimentId,
                                              String workflowInstanceId,
                                              String nodeId)
                                                throws RegistryException

Throws:: RegistryException

getApplicationJobErrors

public List<ApplicationJobExecutionError> getApplicationJobErrors(String experimentId,
                                                         String workflowInstanceId,
                                                         String nodeId,
                                                         String gfacJobId)
                                                           throws RegistryException

Throws:: RegistryException

getApplicationJobErrors

public List<ApplicationJobExecutionError> getApplicationJobErrors(String gfacJobId)
                                                           throws RegistryException

Throws:: RegistryException

getExecutionErrors

public List<ExecutionError> getExecutionErrors(String experimentId,
                                      String workflowInstanceId,
                                      String nodeId,
                                      String gfacJobId,
                                      ExecutionErrors.Source... filterBy)
                                        throws RegistryException

Throws:: RegistryException

addExperimentError

public int addExperimentError(ExperimentExecutionError error)
                       throws RegistryException

Throws:: RegistryException

addWorkflowExecutionError

public int addWorkflowExecutionError(WorkflowExecutionError error)
                              throws RegistryException

Throws:: RegistryException

addNodeExecutionError

public int addNodeExecutionError(NodeExecutionError error)
                          throws RegistryException

Throws:: RegistryException

addApplicationJobExecutionError

public int addApplicationJobExecutionError(ApplicationJobExecutionError error)
                                    throws RegistryException

Throws:: RegistryException

addApplicationJob

public void addApplicationJob(ApplicationJob job)
                       throws RegistryException

Throws:: RegistryException

updateApplicationJob

public void updateApplicationJob(ApplicationJob job)
                          throws RegistryException

Throws:: RegistryException

updateApplicationJobStatus

public void updateApplicationJobStatus(String gfacJobId,
                              ApplicationJob.ApplicationJobStatus status,
                              Date statusUpdateTime)
                                throws RegistryException

Throws:: RegistryException

updateApplicationJobData

public void updateApplicationJobData(String gfacJobId,
                            String jobdata)
                              throws RegistryException

Throws:: RegistryException

updateApplicationJobSubmittedTime

public void updateApplicationJobSubmittedTime(String gfacJobId,
                                     Date submitted)
                                       throws RegistryException

Throws:: RegistryException

updateApplicationJobStatusUpdateTime

public void updateApplicationJobStatusUpdateTime(String gfacJobId,
                                        Date completed)
                                          throws RegistryException

Throws:: RegistryException

updateApplicationJobMetadata

public void updateApplicationJobMetadata(String gfacJobId,
                                String metadata)
                                  throws RegistryException

Throws:: RegistryException

getApplicationJob

public ApplicationJob getApplicationJob(String gfacJobId)
                                 throws RegistryException

Throws:: RegistryException

getApplicationJobsForDescriptors

public List<ApplicationJob> getApplicationJobsForDescriptors(String serviceDescriptionId,
                                                    String hostDescriptionId,
                                                    String applicationDescriptionId)
                                                      throws RegistryException

Throws:: RegistryException

getApplicationJobs

public List<ApplicationJob> getApplicationJobs(String experimentId,
                                      String workflowExecutionId,
                                      String nodeId)
                                        throws RegistryException

Throws:: RegistryException

isApplicationJobExists

public boolean isApplicationJobExists(String gfacJobId)
                               throws RegistryException

Throws:: RegistryException

getApplicationJobStatusHistory

public List<ApplicationJobStatusData> getApplicationJobStatusHistory(String jobId)
                                                              throws RegistryException

Throws:: RegistryException

Class AiravataJPARegistry

Field Summary

Fields inherited from class org.apache.airavata.registry.api.AiravataRegistry2

Constructor Summary

Method Summary

Methods inherited from class org.apache.airavata.registry.api.AiravataRegistry2

Methods inherited from class java.util.Observable

Methods inherited from class java.lang.Object

Constructor Detail

AiravataJPARegistry

Method Detail

initialize

isActive

getConfiguration

getConfigurationList

setConfiguration

addConfiguration

removeAllConfiguration

removeConfiguration

getGFacURIs

getWorkflowInterpreterURIs

getEventingServiceURI

getMessageBoxURI

addGFacURI

addWorkflowInterpreterURI

setEventingURI

setMessageBoxURI

addGFacURI

addWorkflowInterpreterURI

setEventingURI

setMessageBoxURI

removeGFacURI

removeWorkflowInterpreterURI

removeAllGFacURI

removeAllWorkflowInterpreterURI

unsetEventingURI

unsetMessageBoxURI

isHostDescriptorExists

addHostDescriptor

updateHostDescriptor

getHostDescriptor

removeHostDescriptor

getHostDescriptors

getHostDescriptorMetadata

isServiceDescriptorExists

addServiceDescriptor

updateServiceDescriptor

getServiceDescriptor

removeServiceDescriptor

getServiceDescriptors

getServiceDescriptorMetadata

isApplicationDescriptorExists

addApplicationDescriptor

addApplicationDescriptor

udpateApplicationDescriptor

updateApplicationDescriptor

getApplicationDescriptor

getApplicationDescriptors

getApplicationDescriptors

getApplicationDescriptors

removeApplicationDescriptor

getApplicationDescriptorMetadata

isWorkspaceProjectExists

isWorkspaceProjectExists

addWorkspaceProject

updateWorkspaceProject

deleteWorkspaceProject

getWorkspaceProject

getWorkspaceProjects

addExperiment

removeExperiment

getExperiments

getExperiments

getExperiments

getExperiments

isPublishedWorkflowExists

publishWorkflow

publishWorkflow

getPublishedWorkflowGraphXML

getPublishedWorkflowNames